Important Links

Links of Mathematical Biology

---- Organizations ----

The Society for Mathematical Biology

Science's Signal Transduction Knowledge Environment (login and password needed)

NIGMS (NIH)

Society for Industrial and Applied Mathematics

Max Plank Systems Biology


---- Journals ----

Journal of Cell Biology

ComPlexUs (Modelling and Understanding Functional Interactions in theLife Sciences)

---- Conferences ----

First International Symposium on Computational Cell Biology (2001)

2nd International Symposium on Computational Cell Biology (2003)

The Second International Conference on Systems Biology The Future of Biology in the 21st Century (2001)

4th International Conference on Systems Biology
life in our bioshpere, from nano to macro
 

---- Computing Resources ---

CSNDB Cell Signaling Networks Database ImageJ

The National Resource for Cell Analysis and Modeling (NRCAM),Developer of the Virtual Cell

CellML (a XML Markup Language for Cell Biology)

StochSim (a Stochastic Simulation Modeling System)

E-Cell Simulation Environment

COPASI (Complex Pathway Simulator)

Systems Biology Workbench

JDesigner (A Visual Design Tool for Biochemical Networks)

MCell and DReAMM (A General Monte Carlo Simulator of Cellular Microphysiology)

Physiome (Commercial Simulator)

SigPath (an information system designed to support quantitative studies on the signaling pathways and networks of the cell)

E-Cell 3: A Multi-Algorithm, Multi-Timescale Simulation Software Environment

The Pattern Recognition Files
Density-Based Cluster- and Outlier Analysis
How to Explain Hierarchical Clustering

Czech Gold Analysis (see Jiri Janacek and the abstract by Philimonenko, Janacek and Hozak)
http://uemweb.biomed.cas.cz/hozak/gold/IE/
http://www.biomed.cas.cz/~janacek/

---- Genomic Databases ---

KEGG Database
Transpath  BIOBASE - Databases
SPAD The Signaling PAthway Database
Cell Space Knowledge Miner
Genomics and Bioinformatics Group

---- People ----

John Doyle

Conferences

2nd New Mexico Workshop on Computational Cell Biology:
Microscopy, Membrane Biology and Modeling for Biosignaling Research
http://hscwebdev.unm.edu/som/Programs/Bioresearch/Conferences.shtml

SIAM Conference on the Life Sciences 2004
http://www.siam.org/meetings/ls04/